HL_5NWY_058

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5NWY|1|N|A|781, 5NWY|1|N|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_058 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1405

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5NWY|1|N|U|779
5NWY|1|N|G|780
5NWY|1|N|A|781
5NWY|1|N|A|782
5NWY|1|N|A|783
5NWY|1|N|G|784
5NWY|1|N|G|785

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2