HL_5NWY_062

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_062 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1565

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NWY|1|N|G|978
5NWY|1|N|A|979
5NWY|1|N|A|980
5NWY|1|N|A|981
5NWY|1|N|C|982
5NWY|1|N|A|983
5NWY|1|N|A|984
5NWY|1|N|C|985

Current chains

Chain N

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L20

Chain e

50S ribosomal protein L21

Chain m

50S ribosomal protein L30