HL_5NWY_065

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

5NWY|1|N|U|1174, 5NWY|1|N|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_065 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.2976

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5NWY|1|N|C|1172
5NWY|1|N|U|1173
5NWY|1|N|U|1174
5NWY|1|N|A|1175
5NWY|1|N|U|1176
5NWY|1|N|G|1177

Current chains

Chain N

23S rRNA

Nearby chains