HL_5NWY_070

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5NWY|1|N|U|1396, 5NWY|1|N|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_070 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.091

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|G|1389
5NWY|1|N|U|1390
5NWY|1|N|U|1391
5NWY|1|N|A|1392
5NWY|1|N|A|1393
5NWY|1|N|U|1394
5NWY|1|N|A|1395
5NWY|1|N|U|1396
5NWY|1|N|U|1397
5NWY|1|N|C|1398

Current chains

Chain N

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L23