HL_5NWY_075

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5NWY|1|N|A|1614, 5NWY|1|N|A|1616, 5NWY|1|N|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_075 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0698

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NWY|1|N|C|1612
5NWY|1|N|G|1613
5NWY|1|N|A|1614
5NWY|1|N|C|1615
5NWY|1|N|A|1616
5NWY|1|N|C|1617
5NWY|1|N|A|1618
5NWY|1|N|G|1619

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain p

50S ribosomal protein L34

Chain s

VemP nascent chain