HL_5NWY_084

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5NWY|1|N|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_084 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0769

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5NWY|1|N|G|1949
5NWY|1|N|G|1950
5NWY|1|N|U|1951
5NWY|1|N|A|1952
5NWY|1|N|A|1953
5NWY|1|N|G|1954
5NWY|1|N|U|1955
5NWY|1|N|U|1956
5NWY|1|N|C|1957

Current chains

Chain N

23S rRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain X

50S ribosomal protein L14