HL_5NWY_088

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5NWY|1|N|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_088 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0954

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NWY|1|N|C|2248
5NWY|1|N|U|2249
5NWY|1|N|G|2250
5NWY|1|N|G|2251
5NWY|1|N|G|2252
5NWY|1|N|G|2253
5NWY|1|N|C|2254
5NWY|1|N|G|2255
5NWY|1|N|G|2256

Current chains

Chain N

23S rRNA

Nearby chains

Chain M

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16

Chain j

50S ribosomal protein L27