HL_5NWY_090

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_090 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1518

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NWY|1|N|G|2303
5NWY|1|N|G|2304
5NWY|1|N|U|2305
5NWY|1|N|C|2306
5NWY|1|N|G|2307
5NWY|1|N|G|2308
5NWY|1|N|A|2309
5NWY|1|N|C|2310
5NWY|1|N|A|2311
5NWY|1|N|U|2312
5NWY|1|N|C|2313

Current chains

Chain N

23S rRNA

Nearby chains

Chain O

5S ribosomal RNA; 5S rRNA

Chain S

50S ribosomal protein L5