HL_5NWY_095

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

5NWY|1|N|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_095 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1297

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5NWY|1|N|A|2471
5NWY|1|N|G|2472
5NWY|1|N|U|2473
5NWY|1|N|U|2474
5NWY|1|N|C|2475
5NWY|1|N|A|2476
5NWY|1|N|U|2477
5NWY|1|N|A|2478
5NWY|1|N|U|2479

Current chains

Chain N

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L6

Chain r

50S ribosomal protein L36