HL_5NWY_103

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5NWY|1|N|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_103 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0645

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5NWY|1|N|G|2819
5NWY|1|N|A|2820
5NWY|1|N|A|2821
5NWY|1|N|G|2822
5NWY|1|N|A|2823
5NWY|1|N|C|2824
5NWY|1|N|G|2825
5NWY|1|N|A|2826
5NWY|1|N|C|2827

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain a

50S ribosomal protein L17