HL_5NWY_105
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 5NWY|1|O|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_105 not in the Motif Atlas
- Homologous match to HL_5J7L_203
- Geometric discrepancy: 0.1122
- The information below is about HL_5J7L_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NWY|1|O|C|38
5NWY|1|O|A|39
5NWY|1|O|U|40
5NWY|1|O|G|41
5NWY|1|O|C|42
5NWY|1|O|C|43
5NWY|1|O|G|44
Current chains
- Chain O
- 5S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L31
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L5
- Chain b
- 50S ribosomal protein L18
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