HL_5O2R_019

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_019 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.3868

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5O2R|1|A|C|640
5O2R|1|A|U|641
5O2R|1|A|U|642
5O2R|1|A|A|643
5O2R|1|A|A|644
5O2R|1|A|C|645
5O2R|1|A|U|646
5O2R|1|A|G|647
5O2R|1|A|G|648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35