HL_5O2R_024

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGUCACGACUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|G|881
5O2R|1|A|G|882
5O2R|1|A|G|883
5O2R|1|A|U|884
5O2R|1|A|C|885
5O2R|1|A|A|886
5O2R|1|A|C|890
5O2R|1|A|G|891
5O2R|1|A|A|892
5O2R|1|A|C|893
5O2R|1|A|U|894
5O2R|1|A|U|895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13