HL_5O2R_027
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUUGGCUUAGAAGCAGCCAUCA
- Length
- 23 nucleotides
- Bulged bases
- 5O2R|1|A|U|1061, 5O2R|1|A|U|1066, 5O2R|1|A|A|1067, 5O2R|1|A|U|1078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5O2R|1|A|U|1058
5O2R|1|A|G|1059
5O2R|1|A|U|1060
5O2R|1|A|U|1061
5O2R|1|A|G|1062
5O2R|1|A|G|1063
5O2R|1|A|C|1064
5O2R|1|A|U|1065
5O2R|1|A|U|1066
5O2R|1|A|A|1067
5O2R|1|A|G|1068
5O2R|1|A|A|1069
5O2R|1|A|A|1070
5O2R|1|A|G|1071
5O2R|1|A|C|1072
5O2R|1|A|A|1073
5O2R|1|A|G|1074
5O2R|1|A|C|1075
5O2R|1|A|C|1076
5O2R|1|A|A|1077
5O2R|1|A|U|1078
5O2R|1|A|C|1079
5O2R|1|A|A|1080
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
Coloring options: