HL_5O2R_042

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5O2R|1|A|U|1729, 5O2R|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_042 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3612

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5O2R|1|A|C|1727
5O2R|1|A|C|1728
5O2R|1|A|U|1729
5O2R|1|A|C|1730
5O2R|1|A|G|1731
5O2R|1|A|C|1732
5O2R|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains