HL_5O2R_048
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 5O2R|1|A|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O2R_048 not in the Motif Atlas
- Homologous match to HL_7RQB_049
- Geometric discrepancy: 0.1026
- The information below is about HL_7RQB_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51824.1
- Basepair signature
- cWW-F-F-tSH-F-F
- Number of instances in this motif group
- 8
Unit IDs
5O2R|1|A|G|1949
5O2R|1|A|G|1950
5O2R|1|A|U|1951
5O2R|1|A|A|1952
5O2R|1|A|A|1953
5O2R|1|A|G|1954
5O2R|1|A|U|1955
5O2R|1|A|U|1956
5O2R|1|A|C|1957
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- Peptide chain release factor RF1
Coloring options: