HL_5O2R_049
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5O2R|1|A|A|2030, 5O2R|1|A|A|2031, 5O2R|1|A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O2R_049 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.116
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5O2R|1|A|G|2027
5O2R|1|A|U|2028
5O2R|1|A|G|2029
5O2R|1|A|A|2030
5O2R|1|A|A|2031
5O2R|1|A|G|2032
5O2R|1|A|A|2033
5O2R|1|A|U|2034
5O2R|1|A|G|2035
5O2R|1|A|C|2036
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L21
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