HL_5O2R_052
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5O2R|1|A|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O2R_052 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1381
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5O2R|1|A|C|2248
5O2R|1|A|U|2249
5O2R|1|A|G|2250
5O2R|1|A|G|2251
5O2R|1|A|G|2252
5O2R|1|A|G|2253
5O2R|1|A|C|2254
5O2R|1|A|G|2255
5O2R|1|A|G|2256
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain v
- Peptide chain release factor RF1
- Chain x
- Transfer RNA; tRNA
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