HL_5O2R_053

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5O2R|1|A|A|2268, 5O2R|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0909

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5O2R|1|A|C|2264
5O2R|1|A|U|2265
5O2R|1|A|A|2266
5O2R|1|A|A|2267
5O2R|1|A|A|2268
5O2R|1|A|G|2269
5O2R|1|A|A|2270
5O2R|1|A|G|2271
5O2R|1|A|U|2272
5O2R|1|A|A|2273
5O2R|1|A|A|2274
5O2R|1|A|C|2275
5O2R|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27