HL_5O2R_078

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_078 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1489

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5O2R|1|a|A|320
5O2R|1|a|A|321
5O2R|1|a|C|322
5O2R|1|a|U|323
5O2R|1|a|G|324
5O2R|1|a|A|325
5O2R|1|a|G|326
5O2R|1|a|A|327
5O2R|1|a|C|328
5O2R|1|a|A|329
5O2R|1|a|C|330
5O2R|1|a|G|331
5O2R|1|a|G|332
5O2R|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20