HL_5O5J_001
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 5O5J|1|A|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O5J_001 not in the Motif Atlas
- Homologous match to HL_5J7L_001
- Geometric discrepancy: 0.0812
- The information below is about HL_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5O5J|1|A|U|16
5O5J|1|A|U|17
5O5J|1|A|U|18
5O5J|1|A|G|19
5O5J|1|A|A|20
5O5J|1|A|U|21
5O5J|1|A|C|22
5O5J|1|A|C|23
5O5J|1|A|U|24
5O5J|1|A|G|25
5O5J|1|A|G|26
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
Coloring options: