HL_5O5J_005

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUUUUG

Length

6 nucleotides

Bulged bases

5O5J|1|A|U|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O5J_005 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.193

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5O5J|1|A|C|213
5O5J|1|A|U|214
5O5J|1|A|U|215
5O5J|1|A|U|216
5O5J|1|A|U|217
5O5J|1|A|G|218

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16