HL_5O5J_008

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GACUGAGAUACGGC

Length

14 nucleotides

Bulged bases

5O5J|1|A|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O5J|1|A|G|320
5O5J|1|A|A|321
5O5J|1|A|C|322
5O5J|1|A|U|323
5O5J|1|A|G|324
5O5J|1|A|A|325
5O5J|1|A|G|326
5O5J|1|A|A|327
5O5J|1|A|U|328
5O5J|1|A|A|329
5O5J|1|A|C|330
5O5J|1|A|G|331
5O5J|1|A|G|332
5O5J|1|A|C|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20