HL_5O5J_027

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O5J_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3262

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5O5J|1|A|G|1146
5O5J|1|A|G|1147
5O5J|1|A|U|1148
5O5J|1|A|C|1149
5O5J|1|A|A|1150
5O5J|1|A|A|1151
5O5J|1|A|C|1152

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

30S ribosomal protein S2