HL_5O5J_033
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O5J_033 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1596
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5O5J|1|W|A|31
5O5J|1|W|U|32
5O5J|1|W|U|33
5O5J|1|W|G|34
5O5J|1|W|A|35
5O5J|1|W|A|36
5O5J|1|W|A|37
5O5J|1|W|A|38
5O5J|1|W|U|39
Current chains
- Chain W
- tRNA-Phe anticodon stem
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain X
- mRNA fragment
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