HL_5OA3_002
3D structure
- PDB id
- 5OA3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 40S-eIF2D-re-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OA3_002 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.2135
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5OA3|1|1|G|31
5OA3|1|1|C|32
5OA3|1|1|U|33
5OA3|1|1|C|34
5OA3|1|1|A|35
5OA3|1|1|U|36
5OA3|1|1|A|37
5OA3|1|1|A|38
5OA3|1|1|C|39
Current chains
- Chain 1
- initiator Met-tRNA-i
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 2D
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Internal ribosome entry site; IRES
- Chain Q
- 40S ribosomal protein S16
Coloring options: