HL_5OA3_025

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OA3_025 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1886

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5OA3|1|2|U|1178
5OA3|1|2|G|1179
5OA3|1|2|C|1180
5OA3|1|2|A|1181
5OA3|1|2|A|1182
5OA3|1|2|A|1183

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

RIBOSOMAL PROTEIN EL41