HL_5OBM_009
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 5OBM|1|1|G|304, 5OBM|1|1|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OBM_009 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.0873
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5OBM|1|1|G|303
5OBM|1|1|G|304
5OBM|1|1|U|305
5OBM|1|1|A|306
5OBM|1|1|A|307
5OBM|1|1|A|308
5OBM|1|1|U|309
5OBM|1|1|U|310
5OBM|1|1|C|311
5OBM|1|1|C|312
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain O6
- 60S ribosomal protein L36-A
- Chain Q2
- 60S ribosomal protein L42-A
Coloring options: