HL_5OBM_024

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3353

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5OBM|1|1|C|1076
5OBM|1|1|U|1077
5OBM|1|1|U|1078
5OBM|1|1|A|1079
5OBM|1|1|A|1080
5OBM|1|1|U|1081
5OBM|1|1|U|1082
5OBM|1|1|G|1083

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29