HL_5OBM_038

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCACCUUUGC

Length

10 nucleotides

Bulged bases

5OBM|1|1|C|1762, 5OBM|1|1|U|1763, 5OBM|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_038 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2411

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5OBM|1|1|G|1758
5OBM|1|1|C|1759
5OBM|1|1|A|1760
5OBM|1|1|C|1761
5OBM|1|1|C|1762
5OBM|1|1|U|1763
5OBM|1|1|U|1764
5OBM|1|1|U|1765
5OBM|1|1|G|1766
5OBM|1|1|C|1767

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain N2

60S ribosomal protein L22-A