HL_5OBM_145
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAAGCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OBM_145 not in the Motif Atlas
- Geometric match to HL_1QF6_001
- Geometric discrepancy: 0.2917
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5OBM|1|5|G|1543
5OBM|1|5|G|1544
5OBM|1|5|A|1545
5OBM|1|5|A|1546
5OBM|1|5|G|1547
5OBM|1|5|C|1548
5OBM|1|5|U|1549
5OBM|1|5|C|1550
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m5
- 60S ribosomal protein L15-A
- Chain o7
- 60S ribosomal protein L37-A
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