HL_5OBM_170
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OBM_170 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.0942
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5OBM|1|5|C|2693
5OBM|1|5|A|2694
5OBM|1|5|A|2695
5OBM|1|5|A|2696
5OBM|1|5|A|2697
5OBM|1|5|G|2698
5OBM|1|5|G|2699
5OBM|1|5|G|2700
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m0
- 60S ribosomal protein L10
- Chain n1
- 60S ribosomal protein L21-A
- Chain q2
- 60S ribosomal protein L42-A
- Chain sM
- Suppressor protein STM1
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