HL_5OBM_227

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

5OBM|1|1|U|3351, 5OBM|1|1|U|3354, 5OBM|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_227 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.266

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5OBM|1|1|C|3349
5OBM|1|1|C|3350
5OBM|1|1|U|3351
5OBM|1|1|U|3352
5OBM|1|1|G|3353
5OBM|1|1|U|3354
5OBM|1|1|U|3355
5OBM|1|1|G|3356

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A