HL_5OBM_236

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

5OBM|1|5|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_236 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3214

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5OBM|1|5|C|2567
5OBM|1|5|C|2568
5OBM|1|5|A|2569
5OBM|1|5|U|2570
5OBM|1|5|U|2571
5OBM|1|5|C|2572
5OBM|1|5|G|2573
5OBM|1|5|G|2574

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n7

60S ribosomal protein L27-A