HL_5OBM_239

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

5OBM|1|2|U|779, 5OBM|1|2|U|781, 5OBM|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OBM_239 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.5848

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5OBM|1|2|C|777
5OBM|1|2|G|778
5OBM|1|2|U|779
5OBM|1|2|A|780
5OBM|1|2|U|781
5OBM|1|2|U|782
5OBM|1|2|G|783

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A