HL_5ON6_053

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

5ON6|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|1|G|2533
5ON6|1|1|G|2534
5ON6|1|1|A|2535
5ON6|1|1|A|2536
5ON6|1|1|U|2537
5ON6|1|1|U|2538
5ON6|1|1|C|2539
5ON6|1|1|A|2540
5ON6|1|1|U|2541
5ON6|1|1|U|2542
5ON6|1|1|U|2543
5ON6|1|1|U|2544
5ON6|1|1|C|2545
5ON6|1|1|C|2546

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L34-A

Chain C

40S ribosomal protein S1-A

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A