HL_5ON6_131

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

5ON6|1|A|U|779, 5ON6|1|A|U|781, 5ON6|1|A|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_131 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2763

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5ON6|1|A|G|776
5ON6|1|A|C|777
5ON6|1|A|G|778
5ON6|1|A|U|779
5ON6|1|A|A|780
5ON6|1|A|U|781
5ON6|1|A|U|782
5ON6|1|A|G|783
5ON6|1|A|C|784

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain Z

40S ribosomal protein S24-A