HL_5ON6_176

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

5ON6|1|AR|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_176 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3163

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

5ON6|1|AR|C|1238
5ON6|1|AR|C|1239
5ON6|1|AR|A|1240
5ON6|1|AR|U|1241
5ON6|1|AR|G|1242
5ON6|1|AR|G|1243
5ON6|1|AR|A|1244
5ON6|1|AR|A|1245
5ON6|1|AR|G|1246
5ON6|1|AR|U|1247
5ON6|1|AR|C|1248
5ON6|1|AR|G|1249
5ON6|1|AR|G|1250

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12