HL_5ON6_217

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5ON6|1|AR|U|3195, 5ON6|1|AR|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_217 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3016

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5ON6|1|AR|C|3193
5ON6|1|AR|C|3194
5ON6|1|AR|U|3195
5ON6|1|AR|U|3196
5ON6|1|AR|G|3197
5ON6|1|AR|U|3198
5ON6|1|AR|G|3199

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A