HL_5ON6_231

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

5ON6|1|6|C|717, 5ON6|1|6|U|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_231 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3213

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5ON6|1|6|U|715
5ON6|1|6|C|716
5ON6|1|6|C|717
5ON6|1|6|U|718
5ON6|1|6|U|719
5ON6|1|6|G|720
5ON6|1|6|U|721
5ON6|1|6|G|722
5ON6|1|6|G|723

Current chains

Chain 6

18S ribosomal RNA

Nearby chains