HL_5ON6_234

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5ON6|1|A|U|1057, 5ON6|1|A|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_234 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3801

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5ON6|1|A|U|1055
5ON6|1|A|U|1056
5ON6|1|A|U|1057
5ON6|1|A|U|1058
5ON6|1|A|U|1059
5ON6|1|A|U|1060
5ON6|1|A|A|1061
5ON6|1|A|A|1062
5ON6|1|A|U|1063
5ON6|1|A|G|1064

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain S

40S ribosomal protein S17-A

Chain c

40S ribosomal protein S27-A