HL_5ON6_235

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

5ON6|1|AR|U|545, 5ON6|1|AR|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_235 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.2539

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|AR|G|542
5ON6|1|AR|C|543
5ON6|1|AR|C|544
5ON6|1|AR|U|545
5ON6|1|AR|C|546
5ON6|1|AR|G|547
5ON6|1|AR|G|548
5ON6|1|AR|U|549

Current chains

Chain AR

25S ribosomal RNA

Nearby chains