HL_5ONH_004

3D structure

PDB id

5ONH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ONH_004 not in the Motif Atlas

Homologous match to HL_2BTE_004

Geometric discrepancy: 0.0767

The information below is about HL_2BTE_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5ONH|1|B|G|53
5ONH|1|B|U|54
5ONH|1|B|U|55
5ONH|1|B|C|56
5ONH|1|B|A|57
5ONH|1|B|A|58
5ONH|1|B|G|59
5ONH|1|B|U|60
5ONH|1|B|C|61

Current chains

Chain B

L-leucyl-tRNA(Leu)

Nearby chains

Chain A

Leucine--tRNA ligase