HL_5OOL_010

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

5OOL|1|A|C|2036, 5OOL|1|A|A|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_010 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.1724

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5OOL|1|A|U|2035
5OOL|1|A|C|2036
5OOL|1|A|U|2037
5OOL|1|A|U|2038
5OOL|1|A|A|2039
5OOL|1|A|G|2040

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial