HL_5OOL_023

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CACAUG

Length

6 nucleotides

Bulged bases

5OOL|1|A|A|2558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOL_023 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1345

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5OOL|1|A|C|2555
5OOL|1|A|A|2556
5OOL|1|A|C|2557
5OOL|1|A|A|2558
5OOL|1|A|U|2559
5OOL|1|A|G|2560

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial