HL_5OPT_002

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUG

Length

5 nucleotides

Bulged bases

5OPT|1|E|U|75

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_002 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.3546

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5OPT|1|E|C|72
5OPT|1|E|A|73
5OPT|1|E|U|74
5OPT|1|E|U|75
5OPT|1|E|G|76

Current chains

Chain E

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6