HL_5OPT_010

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_010 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1582

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5OPT|1|E|U|415
5OPT|1|E|U|416
5OPT|1|E|A|417
5OPT|1|E|G|418
5OPT|1|E|G|419
5OPT|1|E|G|420

Current chains

Chain E

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11, putative

Chain b

40S ribosomal protein S9, putative

Chain d

40S ribosomal protein S2, putative

Chain e

40S ribosomal protein S15a, putative