HL_5OPT_012

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5OPT|1|E|A|463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_012 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2793

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5OPT|1|E|C|461
5OPT|1|E|U|462
5OPT|1|E|A|463
5OPT|1|E|C|464
5OPT|1|E|G|465
5OPT|1|E|G|466

Current chains

Chain E

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6