HL_5OPT_014

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUUUG

Length

6 nucleotides

Bulged bases

5OPT|1|E|U|544

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_014 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1588

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

5OPT|1|E|C|542
5OPT|1|E|U|543
5OPT|1|E|U|544
5OPT|1|E|U|545
5OPT|1|E|U|546
5OPT|1|E|G|547

Current chains

Chain E

18S rRNA

Nearby chains