HL_5OPT_017

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCCACUUCG

Length

9 nucleotides

Bulged bases

5OPT|1|E|C|729, 5OPT|1|E|U|730, 5OPT|1|E|U|731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_017 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3259

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5OPT|1|E|U|725
5OPT|1|E|C|726
5OPT|1|E|C|727
5OPT|1|E|A|728
5OPT|1|E|C|729
5OPT|1|E|U|730
5OPT|1|E|U|731
5OPT|1|E|C|732
5OPT|1|E|G|733

Current chains

Chain E

18S rRNA

Nearby chains

Chain f

40S ribosomal protein SA

Chain g

40S ribosomal protein S21, putative

Chain k

40S ribosomal protein S17, putative